[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 59 items for (author: chapman & m)

EMDB-40477:
KLHDC2 in complex with EloB and EloC
Method: single particle / : Digianantonio KM, Bekes M

PDB-8sh2:
KLHDC2 in complex with EloB and EloC
Method: single particle / : Digianantonio KM, Bekes M

EMDB-28164:
Structure of FFAR1-Gq complex bound to DHA
Method: single particle / : Kumari P, Inoue A, Chapman K, Lian P, Rosenbaum DM

EMDB-28177:
Structure of FFAR1-Gq complex bound to TAK-875
Method: single particle / : Kumari P, Inoue A, Chapman K, Lian P, Rosenbaum DM

EMDB-28185:
Structure of FFAR1-Gq complex bound to TAK-875 in a lipid nanodisc
Method: single particle / : Kumari P, Inoue A, Chapman K, Lian P, Rosenbaum DM

PDB-8eit:
Structure of FFAR1-Gq complex bound to DHA
Method: single particle / : Kumari P, Inoue A, Chapman K, Lian P, Rosenbaum DM

PDB-8ejc:
Structure of FFAR1-Gq complex bound to TAK-875
Method: single particle / : Kumari P, Inoue A, Chapman K, Lian P, Rosenbaum DM

PDB-8ejk:
Structure of FFAR1-Gq complex bound to TAK-875 in a lipid nanodisc
Method: single particle / : Kumari P, Inoue A, Chapman K, Lian P, Rosenbaum DM

EMDB-26735:
Hantavirus ANDV Gn(H) protein in complex with 2 Fabs ANDV-5 and ANDV-34
Method: single particle / : Binshtein E, Crowe JE

EMDB-26736:
Hantavirus MAPV Gn(H)/Gc protein in complex with 2 Fabs SNV-24 and SNV-53
Method: single particle / : Binshtein E, Crowe JE

EMDB-27318:
CryoEM structure of Hantavirus ANDV Gn(H) protein complex with 2Fabs ANDV-5 and ANDV-34
Method: single particle / : Binshtein E, Crowe JE

PDB-8dbz:
CryoEM structure of Hantavirus ANDV Gn(H) protein complex with 2Fabs ANDV-5 and ANDV-34
Method: single particle / : Binshtein E, Crowe JE

EMDB-25903:
Cryo-electron microscopy of Adeno-associated virus serotype 4 at 2.2 A
Method: single particle / : Zane GM, Silveria MA

PDB-7thr:
Cryo-electron microscopy of Adeno-associated virus serotype 4 at 2.2 A
Method: single particle / : Zane GM, Silveria MA, Meyer NL, White TA, Chapman MS

EMDB-25909:
Adeno-associated Virus Go.1 at 2.9 Angstroms resolution, AAVGo.1 AAV-Go
Method: single particle / : Silveria M, Large E

EMDB-25910:
Adeno-associated virus Go.1 in Complex With Its Cellular Receptor AAVR at 2.4 Angstroms Resolution, AAVGo.1 AAVR
Method: single particle / : Silveria M, Large E

PDB-7ti4:
Adeno-associated Virus Go.1 at 2.9 Angstroms resolution, AAVGo.1 AAV-Go
Method: single particle / : Silveria M, Large E

PDB-7ti5:
Adeno-associated virus Go.1 in Complex With Its Cellular Receptor AAVR at 2.4 Angstroms Resolution, AAVGo.1 AAVR
Method: single particle / : Silveria M, Large E

EMDB-25399:
Molecular mechanism of the the wake-promoting agent TAK-925
Method: single particle / : Yin J, Chapman K, Lian P, De Brabander JK, Rosenbaum DM

PDB-7sr8:
Molecular mechanism of the the wake-promoting agent TAK-925
Method: single particle / : Yin J, Chapman K, Lian P, De Brabander JK, Rosenbaum DM

EMDB-26172:
Global average of aligned subtomograms of AAV2 bound with PKD1-2
Method: subtomogram averaging / : Hu GQ, Silveria MA, Chapman MS, Stagg SM

EMDB-26173:
First class of AAV2 bound with PKD1-2 revealed by classification of aligned subtomgrams
Method: subtomogram averaging / : Hu GQ, Silveria MA, Chapman MS, Stagg SM

EMDB-26174:
Second class of AAV2 bound with PKD1-2 revealed by classification of aligned subtomgrams
Method: subtomogram averaging / : Hu GQ, Silveria MA, Chapman MS, Stagg SM

EMDB-26175:
Third class of AAV2 bound with PKD1-2 revealed by classification of aligned subtomgrams
Method: subtomogram averaging / : Hu GQ, Silveria MA, Chapman MS, Stagg SM

EMDB-26176:
Fourth class of AAV2 bound with PKD1-2 revealed by classification of aligned subtomgrams
Method: subtomogram averaging / : Hu GQ, Silveria MA, Chapman MS, Stagg SM

EMDB-26177:
SPR reconstruction of AAV5 bound with PKD1-2
Method: single particle / : Hu GQ, Silveria MA, Chapman MS, Stagg SM

EMDB-26182:
Global average of aligned subtomograms of AAV5 bound with PKD1-2
Method: subtomogram averaging / : Hu GQ, Silveria MA, Chapman MS, Stagg SM

EMDB-26186:
First class of AAV5 bound with PKD1-2 revealed by classification of aligned subtomgrams
Method: subtomogram averaging / : Hu GQ, Silveria MA, Chapman MS, Stagg SM

EMDB-26187:
Second class of AAV5 bound with PKD1-2 revealed by classification of aligned subtomgrams
Method: subtomogram averaging / : Hu GQ, Silveria MA, Chapman MS, Stagg SM

EMDB-26189:
Third class of AAV5 bound with PKD1-2 revealed by classification of aligned subtomograms
Method: subtomogram averaging / : Hu GQ, Silveria MA, Chapman MS, Stagg SM

EMDB-25389:
Structure of the orexin-2 receptor(OX2R) bound to TAK-925, Gi and scFv16
Method: single particle / : McGrath AP, Kang Y, Flinspach M

PDB-7sqo:
Structure of the orexin-2 receptor(OX2R) bound to TAK-925, Gi and scFv16
Method: single particle / : McGrath AP, Kang Y, Flinspach M

EMDB-22987:
Adeno-associated virus serotype 5 at 2.1 Angstroms resolution, AAV5
Method: single particle / : Silveria M, Chapman MS

EMDB-22988:
Adeno-associated virus serotype 5 in complex with the cellular receptor AAVR at 2.5 Angstroms resolution, AAV5 AAVR
Method: single particle / : Silveria M, Chapman MS

PDB-7kp3:
Adeno-associated virus serotype 5 at 2.1 Angstroms resolution, AAV5
Method: single particle / : Silveria M, Chapman MS

PDB-7kpn:
Adeno-associated virus serotype 5 in complex with the cellular receptor AAVR at 2.5 Angstroms resolution, AAV5 AAVR
Method: single particle / : Silveria M, Chapman MS

EMDB-22854:
Adeno-Associated Virus (AAV-DJ) - cryo-EM structure at 1.56 Angstrom Resolution
Method: single particle / : Xie Q, Yoshioka CK

PDB-7kfr:
Adeno-Associated Virus (AAV-DJ) - cryo-EM structure at 1.56 Angstrom Resolution
Method: single particle / : Xie Q, Yoshioka CK, Chapman MS

EMDB-0553:
Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2
Method: single particle / : Meyer NL, Xie Q, Davulcu O, Yoshioka C, Chapman MS

PDB-6nz0:
Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2
Method: single particle / : Meyer NL, Xie Q, Davulcu O, Yoshioka C, Chapman MS

EMDB-0621:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: subtomogram averaging / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-0622:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: subtomogram averaging / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-0623:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: electron tomography / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-0624:
Structure of the AAV2 with its Cell Receptor, AAVR
Method: electron tomography / : Hu GQ, Meyer NL, Stagg SM, Chapman MS, Davulcu O, Xie Q, Noble AJ, Yoshioka C, Gingerich D, Trzynka A, David L

EMDB-8574:
Single particle reconstruction of chimeric adeno-associated virus-DJ with a Heparanoid Pentasaccharide
Method: single particle / : Xie Q, Noble AJ, Sousa DR, Meyer NL, Davulcu O, Zhang FM, Linhardt RJ, Stagg SM, Chapman MS

PDB-5uf6:
The 2.8 A Electron Microscopy Structure of Adeno-Associated Virus-DJ Bound by a Heparanoid Pentasaccharide
Method: single particle / : Xie Q, Spear JM, Noble AJ, Sousa DR, Meyer NL, Davulcu O, Zhang F, Linhardt RJ, Stagg SM, Chapman M

EMDB-6470:
Single particle reconstruction of AAV-DJ in complex with ARIXTRA
Method: single particle / : Spear JM, Noble AJ, Xie Q, Sousa DR, Chapman MS, Stagg SM

EMDB-2750:
Structure of the CsgG-CsgE complex
Method: single particle / : Krasteva PV, Gubellini F, Remaut H, Fronzes R

PDB-4v4v:
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Method: single particle / : Mitra K, Frank J

PDB-4v4w:
Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Method: single particle / : Mitra K, Frank J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more